Cannot load rjava in r how to#
Cannot load rjava in r iso#

Any suggestion on what to do next? Thanks. However, it is not in the context of Opensuse, so not sure whether I should just replace apt-get with zypper? Besides, it is quite deep for my level of understanding. Jvm: /usr/lib64/jvm /etc/jvm /usr/share/jvmI tried looking at other sites for a solution and thought the following might be relevant? Java: /usr/bin/java /usr/lib64/java /etc/java /usr/share/java whereis jvm Updating Java configuration in whereis java JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux Java library path: $(JAVA_HOME)/lib/server Gcc -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o conftest.so conftest.o -L/usr/lib64/jvm/java-11-openjdk-11/lib/server -ljvm -L/usr/lib64/R/lib -lR Gcc -I'/usr/lib64/R/include' -DNDEBUG -I/usr/lib64/jvm/java-11-openjdk-11/include -I/usr/lib64/jvm/java-11-openjdk-11/include/linux -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c conftest.c -o conftest.o Java home path : /usr/lib64/jvm/java-11-openjdk-11ĭetected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linuxĭetected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm ‘/tmp/RtmpnKttoB/downloaded_packages’I then run the command in terminal: Installation of package ‘rJava’ had non-zero exit status Warning in system(cmd) : error in running commandĮRROR: configuration failed for package ‘rJava’ Make sure you have configured R with Java support (see R documentation) and check config.log for failure reason. configure: error: Unable to run a simple JNI program. noĬhecking whether JNI programs can be compiled. yesĬhecking whether JVM will be loaded dynamically. Java libs : '-L/usr/lib64/jvm/java-11-openjdk-11/lib/server -ljvm'Ĭhecking whether Java run-time works. yesĬhecking whether siglongjmp is declared. yesĬhecking whether sigsetjmp is declared. yesĬonfigure: checking whether gcc supports static inline.Ĭhecking whether setjmp.h is POSIX.1 compatible. yesĬhecking whether time.h and sys/time.h may both be included. yesĬhecking for an ANSI C-conforming const. usr/bin/grepĬhecking for sys/wait.h that is POSIX.1 compatible.

gcc -EĬhecking for grep that handles long lines and -e.

Cannot load rjava in r how to#

none neededĬhecking how to run the C preprocessor.

Cannot load rjava in r iso#

yesĬhecking for gcc option to accept ISO C89. noĬhecking whether we are using the GNU C compiler. a.outĬhecking whether we are cross compiling. yesĬhecking for C compiler default output file name. ** package ‘rJava’ successfully unpacked and MD5 sums checkedĬonfigure: loading site script /usr/share/site/x86_64-unknown-linux-gnuĬhecking whether the C compiler works.

Installing package into ‘/home/by79/R/x86_64-suse-linux-gnu-library/4.0’Ĭontent type 'application/x-gzip' length 664898 bytes (649 KB) Libjvm.so: cannot open shared object file: No such file or directory )Įrror: unable to load shared object '/usr/lib64/R/library/rJava/libs/rJava.so': onLoad failed in loadNamespace() for 'rJava', details:Ĭall: dyn.load(file, DLLpath = DLLpath. Error: package or namespace load failed for ‘qdap’: